:orphan:

Examples
========

These examples provide data sets to test saenopy and see its various applications.



.. raw:: html

    <div class="sphx-glr-thumbnails">


.. raw:: html

    <div class="sphx-glr-thumbcontainer" tooltip="This example evaluates three hepatic stellate cells in 1.2mg/ml collagen with relaxed and defor...">

.. only:: html

  .. image:: /3d_tfm/auto_examples/images/thumb/sphx_glr_1_SingleCellTFM_thumb.png
    :alt:

  :ref:`sphx_glr_3d_tfm_auto_examples_1_SingleCellTFM.py`

.. raw:: html

      <div class="sphx-glr-thumbnail-title">Classic TFM (liver fibroblasts)</div>
    </div>


.. raw:: html

    <div class="sphx-glr-thumbcontainer" tooltip="This example evaluates a single natural killer cell that migrated through 1.2mg/ml collagen, re...">

.. only:: html

  .. image:: /3d_tfm/auto_examples/images/thumb/sphx_glr_2_DynamicalSingleCellTFM_thumb.png
    :alt:

  :ref:`sphx_glr_3d_tfm_auto_examples_2_DynamicalSingleCellTFM.py`

.. raw:: html

      <div class="sphx-glr-thumbnail-title">Dynamic TFM (immune cells)</div>
    </div>


.. raw:: html

    <div class="sphx-glr-thumbcontainer" tooltip="This example calculates matrix deformations around a Human Umbilical Vein Endothelial Cells (HU...">

.. only:: html

  .. image:: /3d_tfm/auto_examples/images/thumb/sphx_glr_3_BeadMeasurement_thumb.png
    :alt:

  :ref:`sphx_glr_3d_tfm_auto_examples_3_BeadMeasurement.py`

.. raw:: html

      <div class="sphx-glr-thumbnail-title">Microbeads to Detect Matrix Deformations</div>
    </div>


.. raw:: html

    <div class="sphx-glr-thumbcontainer" tooltip="This example evaluates contractile forces of an individual intestinal organoid embedded in 1.2m...">

.. only:: html

  .. image:: /3d_tfm/auto_examples/images/thumb/sphx_glr_4_OrganoidTFM_thumb.png
    :alt:

  :ref:`sphx_glr_3d_tfm_auto_examples_4_OrganoidTFM.py`

.. raw:: html

      <div class="sphx-glr-thumbnail-title">Multicellular TFM (intestinal organoids)</div>
    </div>


.. raw:: html

    <div class="sphx-glr-thumbcontainer" tooltip="This example calculates traction forces around an individual immune cell (NK92 natural killer c...">

.. only:: html

  .. image:: /3d_tfm/auto_examples/images/thumb/sphx_glr_6_BrightfieldTFM_thumb.png
    :alt:

  :ref:`sphx_glr_3d_tfm_auto_examples_6_BrightfieldTFM.py`

.. raw:: html

      <div class="sphx-glr-thumbnail-title">Brightfield TFM & Cropped Input</div>
    </div>


.. raw:: html

    </div>


.. toctree::
   :hidden:

   /3d_tfm/auto_examples/1_SingleCellTFM
   /3d_tfm/auto_examples/2_DynamicalSingleCellTFM
   /3d_tfm/auto_examples/3_BeadMeasurement
   /3d_tfm/auto_examples/4_OrganoidTFM
   /3d_tfm/auto_examples/6_BrightfieldTFM



.. only:: html

 .. rst-class:: sphx-glr-signature

    `Gallery generated by Sphinx-Gallery <https://sphinx-gallery.github.io>`_